PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453602.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 494aa    MW: 54034.1 Da    PI: 9.0528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0583105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_016453602.1  83 FVCEICNKGFQRDQNLQLHRRGH 105
                     89*******************88 PP

2zf-C2H212.50.00044159181123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H + +
  XP_016453602.1 159 WKCEKCSKRYAVQSDWKAHSKIC 181
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.03E-682105No hitNo description
Gene3DG3DSA:3.30.160.601.6E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.8E-583105IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01783105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.03E-6154179No hitNo description
SMARTSM00355130159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MIKGMVGDDS MSNLTSASNE ASISSSNRAE IGSALYPQHL APTNIQTQPA PANKKKRNLP  60
GNPDPEAEVI ALSPKSLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVK  120
KKVYVCPEPS CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDWKAHSKI  180
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESVRTTNP LISSSSTSHH LNLHTLQNFQ  240
LKQEQQQQLS NFNLLPPHPS NELSSQLFIH NPTSSSSNNI FGAAAAATSA HMSATALLQK  300
AAQIGVTSSN SNSAPSFFSP TTIATTTGMA GGGDLASREY HQFQNISANN STMAPTTGNF  360
VTGHGLASYG DDNNNNKGAF GHFSVNSGFM EQIHDMQNMM AATTTTTALP CTTNSVGFDE  420
GFGGANNPLI MRGKENNEGL TRDFLGLRAF PHHRDFLNNT TTTGLHHQMG SSSSAAAASF  480
DHQQHNQNQS PWQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4577651e-140CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence.
GenBankHG9755201e-140HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793158.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_016453602.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM1AER70.0M1AER7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000211890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-113indeterminate(ID)-domain 2